PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 870458
Common NameARALYDRAFT_669902
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 293aa    MW: 32742.2 Da    PI: 9.8489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
870458genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1855104255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+ +l+g
  870458  55 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAVYLYG 104
             59****999.**********954...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-3955118IPR001471AP2/ERF domain
PfamPF008475.3E-1255104IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2155112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-2955112IPR001471AP2/ERF domain
CDDcd000184.23E-1855110No hitNo description
PROSITE profilePS5103222.23455112IPR001471AP2/ERF domain
PRINTSPR003672.1E-105667IPR001471AP2/ERF domain
PRINTSPR003672.1E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDPLASQQHH HHHLDDTDQT LTHNNPQSDS TTDSSTSSAQ RKRKGKGGPD NSKFRYRGVR  60
QRSWGKWVAE IREPRKRTRK WLGTFATAED AARAYDRAAV YLYGSRAQLN LTPSSPSSVS  120
SSSSSVSATS SPSTSSSSTQ TLRPLLPRPA AATVGGGATF GPYGIPFNNN IFLNGGTSML  180
CPSYGLLPHQ QQQQQNQMVQ VGQFQHQQYQ NLHFSTNNNK IGEMELTDVP VVNSTSFHHE  240
VALGQEQGGS GEFVKEITVP IKYIYVEESR RRWWKVVWEF YWFNPSFTVY LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1856111359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0409590.0AF040959.1 Arabidopsis thaliana AP2 domain family transcription factor homolog (ABI4) gene, complete cds.
GenBankAF0852790.0AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466120.0DQ446612.1 Arabidopsis thaliana clone pENTR221-At2g40220 abscisic acid-insensitive 4 (At2g40220) mRNA, complete cds.
GenBankDQ6530500.0DQ653050.1 Arabidopsis thaliana clone 0000012408_0000008954 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881702.10.0predicted protein
SwissprotA0MES81e-120ABI4_ARATH; Ethylene-responsive transcription factor ABI4
TrEMBLD7LEH30.0D7LEH3_ARALL; Predicted protein
STRINGAl_scaffold_0004_26210.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.18e-81ERF family protein